NEWS

seqout 0.2.7

NanoString nCounter .RCC files are read as counts
Count tables whose sample columns are numeric ids (key 2683 2685 ...) are read with that header instead of as headerless data.
Downloads retry HTTP 408, 429 and 5xx (NCBI answers 503 under load) and discard the error page before retrying.

download_supplementary(), download_runs(), download_bams() and download_dump() now require dest_dir. They used to default to a directory under the working directory; name it explicitly, e.g. DownloadRuns("SRR12012336", "SRR12012336").
New seqout_online() (SeqoutOnline()) reports whether the API is reachable, checked once per session.
seqout_matrix() reads .h5ad and 10x .h5 files that h5py compressed with LZF (GSE300265) when Bioconductor's rhdf5filters is installed

seqout_matrix() no longer aborts with "'length = N' in coercion to 'logical(1)'" on tar and .rds units (GSE192693, GSE255298). The units table's per-unit assay column was shadowing the requested assay inside the reader.
genevintage moved from Imports to Suggests. SeqoutGeneNames(), SeqoutCorrectNames() and SeqoutSex() ask you to install it from https://saketlab.r-universe.dev when it is missing.