Package: genevintage
Title: Detect Annotation Releases and Repair Gene Names
Version: 0.1.3
Authors@R: 
    person("Saket", "Choudhary", email = "saketc@iitb.ac.in", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-5202-7633"))
Description: Detects the species and the 'Ensembl'
        <https://www.ensembl.org> or 'GENCODE'
        <https://www.gencodegenes.org> annotation release associated
        with a set of gene or transcript identifiers by scoring them
        against a bundled fingerprint of each release. Identifiers are
        then converted to gene names using the matching release. Gene
        symbols that spreadsheet software turned into dates or numbers
        ('SEPT9' to '9-Sep') are restored to the spelling of the chosen
        release. Also retrieves genes by class (mitochondrial,
        sex-linked, protein-coding, ribosomal, transfer RNA, long
        non-coding RNA), exon-union gene lengths, 'Entrez'
        cross-references, and orthologs in another species from
        'Ensembl Compara'.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.1.0)
Imports: stats, tools, utils
Suggests: curl, Matrix, knitr, methods, rmarkdown, spelling, testthat
        (>= 3.0.0), withr
Config/testthat/edition: 3
Roxygen: list(markdown = TRUE)
URL: https://genevintage.saketlab.org/R/,
        https://github.com/saketlab/genevintage
BugReports: https://github.com/saketlab/genevintage/issues
Config/roxygen2/version: 8.1.0
VignetteBuilder: knitr
Language: en-US
Repository: https://saketlab.r-universe.dev
Date/Publication: 2026-10-08 21:26:13 UTC
RemoteUrl: https://github.com/saketlab/genevintage
RemoteRef: main
RemoteSha: 1a48da0faf6494418142bfa94f6188cae3fc1ea6
RemoteSubdir: R
NeedsCompilation: no
Packaged: 2026-10-08 22:08:49 UTC; root
Author: Saket Choudhary [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5202-7633>)
Maintainer: Saket Choudhary <saketc@iitb.ac.in>