Bulk RNA-seq | Human, gene symbols | Mouse, Ensembl gene IDs | Mouse, transcript IDs | Single-cell RNA-seq | Human | Mouse | Species without XIST | Rat: males only | Zebrafish: no panel | Summary
Package: SexSeek 0.1.0
Saket Choudhary
SexSeek: Estimate Genetic Sex from Expression Counts
Infers the genetic sex of samples, donors or cells from bulk or single-cell RNA sequencing counts. Accepts dense or sparse matrices, delimited text files, 10x Genomics outputs, and 'Seurat', 'SingleCellExperiment' and 'SummarizedExperiment' objects.
Authors:
SexSeek_0.1.0.tar.gz
SexSeek_0.1.0.zip(r-4.7-any)SexSeek_0.1.0.zip(r-4.6-any)SexSeek_0.1.0.zip(r-4.5-any)
SexSeek_0.1.0.tgz(r-4.6-any)SexSeek_0.1.0.tgz(r-4.5-any)
SexSeek_0.1.0.tar.gz(r-4.7-any)SexSeek_0.1.0.tar.gz(r-4.6-any)
SexSeek_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
SexSeek/json (API)
| # Install 'SexSeek' in R: |
| install.packages('SexSeek', repos = c('https://saketlab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/saketlab/sexseek/issues
Pkgdown/docs site:https://sexseek.saketlab.org
Last updated from:b64413cc14. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 166 | ||
| source / vignettes | OK | 239 | ||
| linux-release | OK | 148 | ||
| macos-release | OK | 139 | ||
| macos-oldrel | OK | 166 | ||
| windows-devel | OK | 127 | ||
| windows-release | OK | 88 | ||
| windows-oldrel | OK | 113 | ||
| wasm-release | OK | 98 |
Exports:CompareSexDetectSpeciesEstimateSexExampleDataGametologPairsMarkerCellFractionPanelForPlotCellFractionPlotSexEvidenceRead10xDirRead10xH5ResolveSpeciesSexChromosomeGenesSexPanelsSexSpeciesSummariseComparison
Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglatticelifecycleMatrixR6RColorBrewerrlangS7scalesvctrsviridisLitewithr
